BaseFileAssays          package:aroma.Base          R Documentation

_T_h_e _B_a_s_e_F_i_l_e_A_s_s_a_y_s _c_l_a_s_s _e_x_t_e_n_d_i_n_g _B_a_s_e_F_i_l_e_S_e_c_t_i_o_n

_D_e_s_c_r_i_p_t_i_o_n:

     Package:  aroma.Base 
      *Class BaseFileAssays*

     'Object'
      '~~|'
      '~~+--''BaseFileSection'
      '~~~~~~~|'
      '~~~~~~~+--''BaseFileAssays'

     *Directly known subclasses:*


     public static class *BaseFileAssays*
      extends BaseFileSection

_U_s_a_g_e:

     BaseFileAssays(...)

_A_r_g_u_m_e_n_t_s:

     ...: Arguments passed to constructor of superclass.

_F_i_e_l_d_s _a_n_d _M_e_t_h_o_d_s:

     *Methods:*

         'as.character'          Gets a string description of object.
         'getAnnotationColumns'  Gets the names of the annotation columns.
         'getCount'              Gets the (expected) number of assays in the data table.
         'getDataByIds'          Gets a subset of data for one or all bioassays in the bioassay set.
         'getId'                 Gets the id of all bioassays in the bioassay set.
         'getName'               Gets the name of all bioassays in the bioassay set.
         'getParents'            Gets the ids of the assay parents of all bioassays in the bioassay set.
         'nbrOfAssays'           Gets the (expected) number of assays in the data table.
         'setAnnotationColumns'  Sets the names of the annotation columns.
         'setCount'              Sets (or update) the number of assays in the data table.
         'setData'               Sets data of a BASE file section.
         'setDataFieldByIds'     Sets a field of one or all bioassays in the bioassay set.
         'setName'               Sets the names of one or all bioassays in the bioassay set.
         'setParents'            Sets the ids of the assay parents of one or all bioassays in the bioassay set.
         'validate'              Validates assays section.

     *Methods inherited from BaseFileSection*:
      addColumn, as.character, as.list, equals, getColumns, getData,
     getDataByKeys, getHeader, getHeaders, getType, hasColumns,
     hasData, hasHeaders, nbrOfHeaders, print, setColumns, setData,
     setDataFieldByKeys, setHeader, setType, sizeOfData, validate

     *Methods inherited from Object*:
      $, $<-, [[, [[<-, as.character, attach, attachLocally,
     clearCache, clone, detach, equals, extend, finalize, gc,
     getEnvironment, getFields, getInstantiationTime,
     getStaticInstance, hasField, hashCode, ll, load, objectSize,
     print, registerFinalizer, save

_A_u_t_h_o_r(_s):

     Henrik Bengtsson (<URL: http://www.braju.com/R/>)

