BaseFileSpots           package:aroma.Base           R Documentation

_T_h_e _B_a_s_e_F_i_l_e_S_p_o_t_s _c_l_a_s_s _e_x_t_e_n_d_i_n_g _B_a_s_e_F_i_l_e_S_e_c_t_i_o_n

_D_e_s_c_r_i_p_t_i_o_n:

     Package:  aroma.Base 
      *Class BaseFileSpots*

     'Object'
      '~~|'
      '~~+--''BaseFileSection'
      '~~~~~~~|'
      '~~~~~~~+--''BaseFileSpots'

     *Directly known subclasses:*


     public static class *BaseFileSpots*
      extends BaseFileSection

_U_s_a_g_e:

     BaseFileSpots(...)

_A_r_g_u_m_e_n_t_s:

     ...: Arguments passed to constructor of superclass.

_F_i_e_l_d_s _a_n_d _M_e_t_h_o_d_s:

     *Methods:*

         'as.character'    Gets a string description of object.
         'getAssayFields'  Gets the names of the assay-field data columns.
         'getAssays'       Gets the ids of the assays in this section.
         'getColumns'      Gets the names of the non-assay-field data columns.
         'getData'         Gets a subset of or the complete data table.
         'getDataFiles'    Gets the filenames where data of an assay-field section is stored.
         'hasDataFiles'    Checks if data of an assay-field section is stored on file.
         'nbrOfAssays'     Gets the number of assays in this section.
         'setAssays'       Sets the ids of the assays in this section.
         'setColumns'      Sets the column names of the data table.
         'setDataFields'   Sets data field for an assay in a BASE file spots section.
         'setDataFiles'    Sets the filenames where data of an assay-field section is stored.

     *Methods inherited from BaseFileSection*:
      addColumn, as.character, as.list, equals, getColumns, getData,
     getDataByKeys, getHeader, getHeaders, getType, hasColumns,
     hasData, hasHeaders, nbrOfHeaders, print, setColumns, setData,
     setDataFieldByKeys, setHeader, setType, sizeOfData, validate

     *Methods inherited from Object*:
      $, $<-, [[, [[<-, as.character, attach, attachLocally,
     clearCache, clone, detach, equals, extend, finalize, gc,
     getEnvironment, getFields, getInstantiationTime,
     getStaticInstance, hasField, hashCode, ll, load, objectSize,
     print, registerFinalizer, save

_A_u_t_h_o_r(_s):

     Henrik Bengtsson (<URL: http://www.braju.com/R/>)

