Entry: BaseFile
Aliases: BaseFile
Keywords: classes
Description: The BaseFile class
URL: ../../../library/aroma.Base/html/BaseFile.html

Entry: BaseFileAssays
Aliases: BaseFileAssays
Keywords: classes
Description: The BaseFileAssays class extending BaseFileSection
URL: ../../../library/aroma.Base/html/BaseFileAssays.html

Entry: BaseFileBioassaysetinfo
Aliases: BaseFileBioassaysetinfo
Keywords: classes
Description: The BaseFileBioassaysetinfo class extending BaseFileSection
URL: ../../../library/aroma.Base/html/BaseFileBioassaysetinfo.html

Entry: BaseFileParameters
Aliases: BaseFileParameters
Keywords: classes
Description: The BaseFileParameters class extending BaseFileSection
URL: ../../../library/aroma.Base/html/BaseFileParameters.html

Entry: BaseFileSection
Aliases: BaseFileSection
Keywords: classes
Description: The BaseFileSection class
URL: ../../../library/aroma.Base/html/BaseFileSection.html

Entry: BaseFileSpots
Aliases: BaseFileSpots
Keywords: classes
Description: The BaseFileSpots class extending BaseFileSection
URL: ../../../library/aroma.Base/html/BaseFileSpots.html

Entry: BasePluginDispatcher
Aliases: BasePluginDispatcher
Keywords: classes
Description: The BasePluginDispatcher class
URL: ../../../library/aroma.Base/html/BasePluginDispatcher.html

Entry: Non-documented objects
Aliases: Non-documented objects main BasePlugin appendSection getAllDataFiles getSection getSections isSerial nbrOfSections read removeAllDataFiles removeSection replaceSection write write.default equals print as.list validate getType setType nbrOfHeaders setHeader getHeader getHeaders hasHeaders addColumn getColumns hasColumns setColumns getAssayFields hasData getData getDataByKeys setData setDataFieldByKeys sizeOfData attachParameters getParameter getParameters nbrOfParameters getPluginVersion getCount getAnnotationColumns getDataByIds getId getName getParents setAnnotationColumns setCount setDataFieldByIds setName setParents getAssays setAssays nbrOfAssays hasDataFiles getDataFiles setDataFiles hasSerialBioAssaySets setDataFields addEnumerationParameter addEnumerationParameter.BaseFilePlugin addParameter addParameter.BaseFilePlugin addUsedColumns addUsedColumns.BaseFilePlugin addUsedFields addUsedFields.BaseFilePlugin buildReports getBaseFileSections getBaseFileSections.BaseFilePlugin nbrOfParameters.BaseFilePlugin setDescription setDescription.BaseFilePlugin setExecName setExecName.BaseFilePlugin setGeneAverages setGeneAverages.BaseFilePlugin setMinChannels setMinChannels.BaseFilePlugin setSerialFormat setSerialFormat.BaseFilePlugin setUrl setUrl.BaseFilePlugin setUsedColumns setUsedColumns.BaseFilePlugin setUsedFields setUsedFields.BaseFilePlugin setVersion setVersion.BaseFilePlugin
Keywords: documentation internal
Description: Non-documented objects
URL: ../../../library/aroma.Base/html/Non-documented_objects.html

Entry: addColumn.BaseFileSection
Aliases: addColumn.BaseFileSection BaseFileSection.addColumn addColumn.BaseFileSection addColumn,BaseFileSection-method
Keywords: internal methods
Description: Adds a column to the other column names
URL: ../../../library/aroma.Base/html/addColumn.BaseFileSection.html

Entry: appendSection.BaseFile
Aliases: appendSection.BaseFile BaseFile.appendSection appendSection.BaseFile appendSection,BaseFile-method
Keywords: internal methods
Description: Adds a section to this BASE file structure
URL: ../../../library/aroma.Base/html/appendSection.BaseFile.html

Entry: aroma.Base-package
Aliases: aroma.Base-package aroma.Base
Keywords: package
Description: Package aroma.Base
URL: ../../../library/aroma.Base/html/aroma.Base-package.html

Entry: as.character.BaseFile
Aliases: as.character.BaseFile BaseFile.as.character as.character.BaseFile as.character,BaseFile-method
Keywords: internal methods
Description: Gets a string description of object
URL: ../../../library/aroma.Base/html/as.character.BaseFile.html

Entry: as.character.BaseFileAssays
Aliases: as.character.BaseFileAssays BaseFileAssays.as.character as.character.BaseFileAssays as.character,BaseFileAssays-method
Keywords: internal methods
Description: Gets a string description of object
URL: ../../../library/aroma.Base/html/as.character.BaseFileAssays.html

Entry: as.character.BaseFileBioassaysetinfo
Aliases: as.character.BaseFileBioassaysetinfo BaseFileBioassaysetinfo.as.character as.character.BaseFileBioassaysetinfo as.character,BaseFileBioassaysetinfo-method
Keywords: internal methods
Description: Gets a string description of object
URL: ../../../library/aroma.Base/html/as.character.BaseFileBioassaysetinfo.html

Entry: as.character.BaseFileParameters
Aliases: as.character.BaseFileParameters BaseFileParameters.as.character as.character.BaseFileParameters as.character,BaseFileParameters-method
Keywords: internal methods
Description: Gets a string description of BASE parameters
URL: ../../../library/aroma.Base/html/as.character.BaseFileParameters.html

Entry: as.character.BaseFileSection
Aliases: as.character.BaseFileSection BaseFileSection.as.character as.character.BaseFileSection as.character,BaseFileSection-method
Keywords: internal methods
Description: Gets a string description of object
URL: ../../../library/aroma.Base/html/as.character.BaseFileSection.html

Entry: as.character.BaseFileSpots
Aliases: as.character.BaseFileSpots BaseFileSpots.as.character as.character.BaseFileSpots as.character,BaseFileSpots-method
Keywords: internal methods
Description: Gets a string description of object
URL: ../../../library/aroma.Base/html/as.character.BaseFileSpots.html

Entry: as.list.BaseFile
Aliases: as.list.BaseFile BaseFile.as.list as.list.BaseFile as.list,BaseFile-method
Keywords: internal methods
Description: Gets a list representation of object
URL: ../../../library/aroma.Base/html/as.list.BaseFile.html

Entry: as.list.BaseFileSection
Aliases: as.list.BaseFileSection BaseFileSection.as.list as.list.BaseFileSection as.list,BaseFileSection-method
Keywords: internal methods
Description: Gets a list representation of object
URL: ../../../library/aroma.Base/html/as.list.BaseFileSection.html

Entry: attachParameters.BaseFileParameters
Aliases: attachParameters.BaseFileParameters BaseFileParameters.attachParameters attachParameters.BaseFileParameters attachParameters,BaseFileParameters-method
Keywords: internal methods
Description: Assigns the parameters of a BASE parameters section locally
URL: ../../../library/aroma.Base/html/attachParameters.BaseFileParameters.html

Entry: buildReports.BasePluginDispatcher
Aliases: buildReports.BasePluginDispatcher BasePluginDispatcher.buildReports buildReports.BasePluginDispatcher buildReports,BasePluginDispatcher-method
Keywords: internal methods
Description: Build reports from RSP templates
URL: ../../../library/aroma.Base/html/buildReports.BasePluginDispatcher.html

Entry: equals.BaseFile
Aliases: equals.BaseFile BaseFile.equals equals.BaseFile equals,BaseFile-method
Keywords: internal methods
Description: Checks if this object equals another
URL: ../../../library/aroma.Base/html/equals.BaseFile.html

Entry: equals.BaseFileSection
Aliases: equals.BaseFileSection BaseFileSection.equals equals.BaseFileSection equals,BaseFileSection-method
Keywords: internal methods
Description: Checks if a BASE file section equals another
URL: ../../../library/aroma.Base/html/equals.BaseFileSection.html

Entry: extractBaseFileSpotsData
Aliases: extractBaseFileSpotsData.default extractBaseFileSpotsData
Keywords: file IO
Description: Low-level function to extract assay data and save it to file instead
URL: ../../../library/aroma.Base/html/extractBaseFileSpotsData.html

Entry: getAllDataFiles.BaseFile
Aliases: getAllDataFiles.BaseFile BaseFile.getAllDataFiles getAllDataFiles.BaseFile getAllDataFiles,BaseFile-method
Keywords: internal methods
Description: Gets the names of a external data files used by a BASE file
URL: ../../../library/aroma.Base/html/getAllDataFiles.BaseFile.html

Entry: getAnnotationColumns.BaseFileAssays
Aliases: getAnnotationColumns.BaseFileAssays BaseFileAssays.getAnnotationColumns getAnnotationColumns.BaseFileAssays getAnnotationColumns,BaseFileAssays-method
Keywords: internal methods
Description: Gets the names of the annotation columns
URL: ../../../library/aroma.Base/html/getAnnotationColumns.BaseFileAssays.html

Entry: getAssayFields.BaseFileSpots
Aliases: getAssayFields.BaseFileSpots BaseFileSpots.getAssayFields getAssayFields.BaseFileSpots getAssayFields,BaseFileSpots-method
Keywords: internal methods
Description: Gets the names of the assay-field data columns
URL: ../../../library/aroma.Base/html/getAssayFields.BaseFileSpots.html

Entry: getAssays.BaseFileSpots
Aliases: getAssays.BaseFileSpots BaseFileSpots.getAssays getAssays.BaseFileSpots getAssays,BaseFileSpots-method
Keywords: internal methods
Description: Gets the ids of the assays in this section
URL: ../../../library/aroma.Base/html/getAssays.BaseFileSpots.html

Entry: getColumns.BaseFileSection
Aliases: getColumns.BaseFileSection BaseFileSection.getColumns getColumns.BaseFileSection getColumns,BaseFileSection-method
Keywords: internal methods
Description: Gets the column names of the data table
URL: ../../../library/aroma.Base/html/getColumns.BaseFileSection.html

Entry: getColumns.BaseFileSpots
Aliases: getColumns.BaseFileSpots BaseFileSpots.getColumns getColumns.BaseFileSpots getColumns,BaseFileSpots-method
Keywords: internal methods
Description: Gets the names of the non-assay-field data columns
URL: ../../../library/aroma.Base/html/getColumns.BaseFileSpots.html

Entry: getCount.BaseFileAssays
Aliases: getCount.BaseFileAssays BaseFileAssays.getCount getCount.BaseFileAssays getCount,BaseFileAssays-method
Keywords: internal methods
Description: Gets the (expected) number of assays in the data table
URL: ../../../library/aroma.Base/html/getCount.BaseFileAssays.html

Entry: getData.BaseFileSection
Aliases: getData.BaseFileSection BaseFileSection.getData getData.BaseFileSection getData,BaseFileSection-method
Keywords: internal methods
Description: Gets all or a subset of data of a BASE file section
URL: ../../../library/aroma.Base/html/getData.BaseFileSection.html

Entry: getData.BaseFileSpots
Aliases: getData.BaseFileSpots BaseFileSpots.getData getData.BaseFileSpots getData,BaseFileSpots-method
Keywords: internal methods
Description: Gets a subset of or the complete data table
URL: ../../../library/aroma.Base/html/getData.BaseFileSpots.html

Entry: getDataByIds.BaseFileAssays
Aliases: getDataByIds.BaseFileAssays BaseFileAssays.getDataByIds getDataByIds.BaseFileAssays getDataByIds,BaseFileAssays-method
Keywords: internal methods
Description: Gets a subset of data for one or all bioassays in the bioassay set
URL: ../../../library/aroma.Base/html/getDataByIds.BaseFileAssays.html

Entry: getDataByKeys.BaseFileSection
Aliases: getDataByKeys.BaseFileSection BaseFileSection.getDataByKeys getDataByKeys.BaseFileSection getDataByKeys,BaseFileSection-method
Keywords: internal methods
Description: Gets a subset of data for one or all bioassays in the bioassay set
URL: ../../../library/aroma.Base/html/getDataByKeys.BaseFileSection.html

Entry: getDataFiles.BaseFileSpots
Aliases: getDataFiles.BaseFileSpots BaseFileSpots.getDataFiles getDataFiles.BaseFileSpots getDataFiles,BaseFileSpots-method
Keywords: internal methods
Description: Gets the filenames where data of an assay-field section is stored
URL: ../../../library/aroma.Base/html/getDataFiles.BaseFileSpots.html

Entry: getHeader.BaseFileSection
Aliases: getHeader.BaseFileSection BaseFileSection.getHeader getHeader.BaseFileSection getHeader,BaseFileSection-method
Keywords: internal methods
Description: Gets one header of a BASE section
URL: ../../../library/aroma.Base/html/getHeader.BaseFileSection.html

Entry: getHeaders.BaseFileSection
Aliases: getHeaders.BaseFileSection BaseFileSection.getHeaders getHeaders.BaseFileSection getHeaders,BaseFileSection-method
Keywords: internal methods
Description: Gets the headers of a BASE section
URL: ../../../library/aroma.Base/html/getHeaders.BaseFileSection.html

Entry: getId.BaseFileAssays
Aliases: getId.BaseFileAssays BaseFileAssays.getId getId.BaseFileAssays getId,BaseFileAssays-method
Keywords: internal methods
Description: Gets the id of all bioassays in the bioassay set
URL: ../../../library/aroma.Base/html/getId.BaseFileAssays.html

Entry: getName.BaseFileAssays
Aliases: getName.BaseFileAssays BaseFileAssays.getName getName.BaseFileAssays getName,BaseFileAssays-method
Keywords: internal methods
Description: Gets the name of all bioassays in the bioassay set
URL: ../../../library/aroma.Base/html/getName.BaseFileAssays.html

Entry: getName.BaseFileBioassaysetinfo
Aliases: getName.BaseFileBioassaysetinfo BaseFileBioassaysetinfo.getName getName.BaseFileBioassaysetinfo getName,BaseFileBioassaysetinfo-method
Keywords: internal methods
Description: Gets the name of the bioassay set
URL: ../../../library/aroma.Base/html/getName.BaseFileBioassaysetinfo.html

Entry: getParameter.BaseFileParameters
Aliases: getParameter.BaseFileParameters BaseFileParameters.getParameter getParameter.BaseFileParameters getParameter,BaseFileParameters-method
Keywords: internal methods
Description: Gets one parameter from a BASE parameters section
URL: ../../../library/aroma.Base/html/getParameter.BaseFileParameters.html

Entry: getParameters.BaseFileParameters
Aliases: getParameters.BaseFileParameters BaseFileParameters.getParameters getParameters.BaseFileParameters getParameters,BaseFileParameters-method
Keywords: internal methods
Description: Gets parameters from a BASE parameters section
URL: ../../../library/aroma.Base/html/getParameters.BaseFileParameters.html

Entry: getParents.BaseFileAssays
Aliases: getParents.BaseFileAssays BaseFileAssays.getParents getParents.BaseFileAssays getParents,BaseFileAssays-method
Keywords: internal methods
Description: Gets the ids of the assay parents of all bioassays in the bioassay set
URL: ../../../library/aroma.Base/html/getParents.BaseFileAssays.html

Entry: getPluginVersion.BaseFileParameters
Aliases: getPluginVersion.BaseFileParameters BaseFileParameters.getPluginVersion getPluginVersion.BaseFileParameters getPluginVersion,BaseFileParameters-method
Keywords: internal methods
Description: Gets the plugin version of a BASE parameters section
URL: ../../../library/aroma.Base/html/getPluginVersion.BaseFileParameters.html

Entry: getSection.BaseFile
Aliases: getSection.BaseFile BaseFile.getSection getSection.BaseFile getSection,BaseFile-method
Keywords: internal methods
Description: Gets one section of this BASE file structure
URL: ../../../library/aroma.Base/html/getSection.BaseFile.html

Entry: getSections.BaseFile
Aliases: getSections.BaseFile BaseFile.getSections getSections.BaseFile getSections,BaseFile-method
Keywords: internal methods
Description: Gets a subset or all BASE sections
URL: ../../../library/aroma.Base/html/getSections.BaseFile.html

Entry: getType.BaseFileSection
Aliases: getType.BaseFileSection BaseFileSection.getType getType.BaseFileSection getType,BaseFileSection-method
Keywords: internal methods
Description: Gets the type of a BASE section
URL: ../../../library/aroma.Base/html/getType.BaseFileSection.html

Entry: hasColumns.BaseFileSection
Aliases: hasColumns.BaseFileSection BaseFileSection.hasColumns hasColumns.BaseFileSection hasColumns,BaseFileSection-method
Keywords: internal methods
Description: Checks if certain columns exists or not
URL: ../../../library/aroma.Base/html/hasColumns.BaseFileSection.html

Entry: hasData.BaseFileSection
Aliases: hasData.BaseFileSection BaseFileSection.hasData hasData.BaseFileSection hasData,BaseFileSection-method
Keywords: internal methods
Description: Checks if section has a data table
URL: ../../../library/aroma.Base/html/hasData.BaseFileSection.html

Entry: hasDataFiles.BaseFileSpots
Aliases: hasDataFiles.BaseFileSpots BaseFileSpots.hasDataFiles hasDataFiles.BaseFileSpots hasDataFiles,BaseFileSpots-method
Keywords: internal methods
Description: Checks if data of an assay-field section is stored on file
URL: ../../../library/aroma.Base/html/hasDataFiles.BaseFileSpots.html

Entry: hasHeaders.BaseFileSection
Aliases: hasHeaders.BaseFileSection BaseFileSection.hasHeaders hasHeaders.BaseFileSection hasHeaders,BaseFileSection-method
Keywords: internal methods
Description: Checks if specified headers exists in a BASE section
URL: ../../../library/aroma.Base/html/hasHeaders.BaseFileSection.html

Entry: hasSerialBioAssaySets.BaseFile
Aliases: hasSerialBioAssaySets.BaseFile BaseFile.hasSerialBioAssaySets hasSerialBioAssaySets.BaseFile hasSerialBioAssaySets,BaseFile-method
Keywords: internal methods
Description: Checks if the bioassay sets have data in serial format
URL: ../../../library/aroma.Base/html/hasSerialBioAssaySets.BaseFile.html

Entry: isSerial.BaseFile
Aliases: isSerial.BaseFile BaseFile.isSerial isSerial.BaseFile isSerial,BaseFile-method
Keywords: internal methods
Description: Checks if a BASE file is in serial format or not
URL: ../../../library/aroma.Base/html/isSerial.BaseFile.html

Entry: main.BasePluginDispatcher
Aliases: main.BasePluginDispatcher BasePluginDispatcher.main main.BasePluginDispatcher main,BasePluginDispatcher-method
Keywords: internal methods
Description: Static method to start a BASE plugin
URL: ../../../library/aroma.Base/html/main.BasePluginDispatcher.html

Entry: nbrOfAssays.BaseFileAssays
Aliases: nbrOfAssays.BaseFileAssays BaseFileAssays.nbrOfAssays nbrOfAssays.BaseFileAssays nbrOfAssays,BaseFileAssays-method
Keywords: internal methods
Description: Gets the (expected) number of assays in the data table
URL: ../../../library/aroma.Base/html/nbrOfAssays.BaseFileAssays.html

Entry: nbrOfAssays.BaseFileSpots
Aliases: nbrOfAssays.BaseFileSpots BaseFileSpots.nbrOfAssays nbrOfAssays.BaseFileSpots nbrOfAssays,BaseFileSpots-method
Keywords: internal methods
Description: Gets the number of assays in this section
URL: ../../../library/aroma.Base/html/nbrOfAssays.BaseFileSpots.html

Entry: nbrOfHeaders.BaseFileSection
Aliases: nbrOfHeaders.BaseFileSection BaseFileSection.nbrOfHeaders nbrOfHeaders.BaseFileSection nbrOfHeaders,BaseFileSection-method
Keywords: internal methods
Description: Gets the number of headers in a BASE section
URL: ../../../library/aroma.Base/html/nbrOfHeaders.BaseFileSection.html

Entry: nbrOfParameters.BaseFileParameters
Aliases: nbrOfParameters.BaseFileParameters BaseFileParameters.nbrOfParameters nbrOfParameters.BaseFileParameters nbrOfParameters,BaseFileParameters-method
Keywords: internal methods
Description: Gets the number of parameters in a BASE parameters section
URL: ../../../library/aroma.Base/html/nbrOfParameters.BaseFileParameters.html

Entry: nbrOfSections.BaseFile
Aliases: nbrOfSections.BaseFile BaseFile.nbrOfSections nbrOfSections.BaseFile nbrOfSections,BaseFile-method BaseFile.length length.BaseFile length,BaseFile-method
Keywords: internal methods
Description: Gets the number of sections in this BASE file structure
URL: ../../../library/aroma.Base/html/nbrOfSections.BaseFile.html

Entry: patchCode.BasePluginDispatcher
Aliases: patchCode.BasePluginDispatcher BasePluginDispatcher.patchCode patchCode.BasePluginDispatcher patchCode,BasePluginDispatcher-method
Keywords: internal methods
Description: Sources all R source files in the patch directory
URL: ../../../library/aroma.Base/html/patchCode.BasePluginDispatcher.html

Entry: print.BaseFileSection
Aliases: print.BaseFileSection BaseFileSection.print print.BaseFileSection print,BaseFileSection-method
Keywords: internal methods
Description: Prints a BASE file section to stdout
URL: ../../../library/aroma.Base/html/print.BaseFileSection.html

Entry: read.BaseFile
Aliases: read.BaseFile BaseFile.read read.BaseFile read,BaseFile-method
Keywords: internal methods
Description: Static method to read a BASE file structure
URL: ../../../library/aroma.Base/html/read.BaseFile.html

Entry: readBaseFile
Aliases: readBaseFile.default readBaseFile
Keywords: file IO
Description: Low-level function to read a BASE file (stream) from a connection or a file
URL: ../../../library/aroma.Base/html/readBaseFile.html

Entry: readBaseFileSection
Aliases: readBaseFileSection.default readBaseFileSection
Keywords: file IO
Description: Low-level function to read a BASE file section from a connection or a file
URL: ../../../library/aroma.Base/html/readBaseFileSection.html

Entry: removeAllDataFiles.BaseFile
Aliases: removeAllDataFiles.BaseFile BaseFile.removeAllDataFiles removeAllDataFiles.BaseFile removeAllDataFiles,BaseFile-method
Keywords: internal methods
Description: Removes all external data files used by a BASE file structure
URL: ../../../library/aroma.Base/html/removeAllDataFiles.BaseFile.html

Entry: removeSection.BaseFile
Aliases: removeSection.BaseFile BaseFile.removeSection removeSection.BaseFile removeSection,BaseFile-method
Keywords: internal methods
Description: Removes a section from a BASE file structure
URL: ../../../library/aroma.Base/html/removeSection.BaseFile.html

Entry: replaceSection.BaseFile
Aliases: replaceSection.BaseFile BaseFile.replaceSection replaceSection.BaseFile replaceSection,BaseFile-method
Keywords: internal methods
Description: Replaces a section in a BASE file structure
URL: ../../../library/aroma.Base/html/replaceSection.BaseFile.html

Entry: seq.BaseFile
Aliases: seq.BaseFile BaseFile.seq seq.BaseFile seq,BaseFile-method
Keywords: internal methods
Description: Gets an index sequence for the sections in this BASE file structure
URL: ../../../library/aroma.Base/html/seq.BaseFile.html

Entry: setAnnotationColumns.BaseFileAssays
Aliases: setAnnotationColumns.BaseFileAssays BaseFileAssays.setAnnotationColumns setAnnotationColumns.BaseFileAssays setAnnotationColumns,BaseFileAssays-method
Keywords: internal methods
Description: Sets the names of the annotation columns
URL: ../../../library/aroma.Base/html/setAnnotationColumns.BaseFileAssays.html

Entry: setAssays.BaseFileSpots
Aliases: setAssays.BaseFileSpots BaseFileSpots.setAssays setAssays.BaseFileSpots setAssays,BaseFileSpots-method
Keywords: internal methods
Description: Sets the ids of the assays in this section
URL: ../../../library/aroma.Base/html/setAssays.BaseFileSpots.html

Entry: setColumns.BaseFileSection
Aliases: setColumns.BaseFileSection BaseFileSection.setColumns setColumns.BaseFileSection setColumns,BaseFileSection-method
Keywords: internal methods
Description: Sets the column names of the data table
URL: ../../../library/aroma.Base/html/setColumns.BaseFileSection.html

Entry: setColumns.BaseFileSpots
Aliases: setColumns.BaseFileSpots BaseFileSpots.setColumns setColumns.BaseFileSpots setColumns,BaseFileSpots-method
Keywords: internal methods
Description: Sets the column names of the data table
URL: ../../../library/aroma.Base/html/setColumns.BaseFileSpots.html

Entry: setCount.BaseFileAssays
Aliases: setCount.BaseFileAssays BaseFileAssays.setCount setCount.BaseFileAssays setCount,BaseFileAssays-method
Keywords: internal methods
Description: Sets (or update) the number of assays in the data table
URL: ../../../library/aroma.Base/html/setCount.BaseFileAssays.html

Entry: setData.BaseFileAssays
Aliases: setData.BaseFileAssays BaseFileAssays.setData setData.BaseFileAssays setData,BaseFileAssays-method
Keywords: internal methods
Description: Sets data of a BASE file section
URL: ../../../library/aroma.Base/html/setData.BaseFileAssays.html

Entry: setData.BaseFileSection
Aliases: setData.BaseFileSection BaseFileSection.setData setData.BaseFileSection setData,BaseFileSection-method
Keywords: internal methods
Description: Sets data of a BASE file section
URL: ../../../library/aroma.Base/html/setData.BaseFileSection.html

Entry: setDataFieldByIds.BaseFileAssays
Aliases: setDataFieldByIds.BaseFileAssays BaseFileAssays.setDataFieldByIds setDataFieldByIds.BaseFileAssays setDataFieldByIds,BaseFileAssays-method
Keywords: internal methods
Description: Sets a field of one or all bioassays in the bioassay set
URL: ../../../library/aroma.Base/html/setDataFieldByIds.BaseFileAssays.html

Entry: setDataFieldByKeys.BaseFileSection
Aliases: setDataFieldByKeys.BaseFileSection BaseFileSection.setDataFieldByKeys setDataFieldByKeys.BaseFileSection setDataFieldByKeys,BaseFileSection-method
Keywords: internal methods
Description: Sets a data field by another key field
URL: ../../../library/aroma.Base/html/setDataFieldByKeys.BaseFileSection.html

Entry: setDataFields.BaseFileSpots
Aliases: setDataFields.BaseFileSpots BaseFileSpots.setDataFields setDataFields.BaseFileSpots setDataFields,BaseFileSpots-method
Keywords: internal methods
Description: Sets data field for an assay in a BASE file spots section
URL: ../../../library/aroma.Base/html/setDataFields.BaseFileSpots.html

Entry: setDataFiles.BaseFileSpots
Aliases: setDataFiles.BaseFileSpots BaseFileSpots.setDataFiles setDataFiles.BaseFileSpots setDataFiles,BaseFileSpots-method
Keywords: internal methods
Description: Sets the filenames where data of an assay-field section is stored
URL: ../../../library/aroma.Base/html/setDataFiles.BaseFileSpots.html

Entry: setHeader.BaseFileSection
Aliases: setHeader.BaseFileSection BaseFileSection.setHeader setHeader.BaseFileSection setHeader,BaseFileSection-method
Keywords: internal methods
Description: Sets a header of a BASE section
URL: ../../../library/aroma.Base/html/setHeader.BaseFileSection.html

Entry: setName.BaseFileAssays
Aliases: setName.BaseFileAssays BaseFileAssays.setName setName.BaseFileAssays setName,BaseFileAssays-method
Keywords: internal methods
Description: Sets the names of one or all bioassays in the bioassay set
URL: ../../../library/aroma.Base/html/setName.BaseFileAssays.html

Entry: setParents.BaseFileAssays
Aliases: setParents.BaseFileAssays BaseFileAssays.setParents setParents.BaseFileAssays setParents,BaseFileAssays-method
Keywords: internal methods
Description: Sets the ids of the assay parents of one or all bioassays in the bioassay set
URL: ../../../library/aroma.Base/html/setParents.BaseFileAssays.html

Entry: setType.BaseFileSection
Aliases: setType.BaseFileSection BaseFileSection.setType setType.BaseFileSection setType,BaseFileSection-method
Keywords: internal methods
Description: Sets the type of a BASE section
URL: ../../../library/aroma.Base/html/setType.BaseFileSection.html

Entry: sizeOfData.BaseFileSection
Aliases: sizeOfData.BaseFileSection BaseFileSection.sizeOfData sizeOfData.BaseFileSection sizeOfData,BaseFileSection-method
Keywords: internal methods
Description: Gets the dimension of the data table
URL: ../../../library/aroma.Base/html/sizeOfData.BaseFileSection.html

Entry: validate.BaseFileAssays
Aliases: validate.BaseFileAssays BaseFileAssays.validate validate.BaseFileAssays validate,BaseFileAssays-method
Keywords: internal methods
Description: Validates assays section
URL: ../../../library/aroma.Base/html/validate.BaseFileAssays.html

Entry: validate.BaseFileBioassaysetinfo
Aliases: validate.BaseFileBioassaysetinfo BaseFileBioassaysetinfo.validate validate.BaseFileBioassaysetinfo validate,BaseFileBioassaysetinfo-method
Keywords: internal methods
Description: Validates bioassay-set information section
URL: ../../../library/aroma.Base/html/validate.BaseFileBioassaysetinfo.html

Entry: validate.BaseFileSection
Aliases: validate.BaseFileSection BaseFileSection.validate validate.BaseFileSection validate,BaseFileSection-method
Keywords: internal methods
Description: Validates BASE file section
URL: ../../../library/aroma.Base/html/validate.BaseFileSection.html

Entry: write.BaseFile
Aliases: write.BaseFile BaseFile.write write.BaseFile write,BaseFile-method
Keywords: internal methods
Description: Writes this BASE file structure
URL: ../../../library/aroma.Base/html/write.BaseFile.html

Entry: writeBaseFile
Aliases: writeBaseFile.default writeBaseFile
Keywords: file IO
Description: Low-level function to write a BASE file structure to a connection or a file
URL: ../../../library/aroma.Base/html/writeBaseFile.html

Entry: writeBaseFileSection
Aliases: writeBaseFileSection.default writeBaseFileSection
Keywords: file IO
Description: Low-level function to write a BASE file section to a connection or a file
URL: ../../../library/aroma.Base/html/writeBaseFileSection.html
