############################################################################
# TCGA DCC Structure
############################################################################
tcga4yeo/
 tumor/
  gbm/
   cgcc/
    broad.mit.edu/
     genome_wide_snp_6/
      snp/
       broad.mit.edu_GBM.Genome_Wide_SNP_6.1.5.0/
       broad.mit.edu_GBM.Genome_Wide_SNP_6.2.5.0/
       broad.mit.edu_GBM.Genome_Wide_SNP_6.3.5.0/
       broad.mit.edu_GBM.Genome_Wide_SNP_6.4.5.0/
       broad.mit.edu_GBM.Genome_Wide_SNP_6.5.5.0/
       broad.mit.edu_GBM.Genome_Wide_SNP_6.6.5.0/
       broad.mit.edu_GBM.Genome_Wide_SNP_6.7.5.0/
       broad.mit.edu_GBM.Genome_Wide_SNP_6.8.7.0/
       broad.mit.edu_GBM.Genome_Wide_SNP_6.10.7.0/
       broad.mit.edu_GBM.Genome_Wide_SNP_6.16.7.0/
       broad.mit.edu_GBM.Genome_Wide_SNP_6.mage-tab.20.1001.0/
       broad.mit.edu_GBM.Genome_Wide_SNP_6.aux.20.1001.0/
       broad.mit.edu_GBM.Genome_Wide_SNP_6.Level_1.20.1001.0/
 
    hudsonalpha.org/
     humanhap550/
      snp/
       hudsonalpha.org_GBM.HumanHap550.2.3.0/
       hudsonalpha.org_GBM.HumanHap550.3.4.0/
       hudsonalpha.org_GBM.HumanHap550.4.3.0/
       hudsonalpha.org_GBM.HumanHap550.5.1.0/
       hudsonalpha.org_GBM.HumanHap550.6.2.0/
       hudsonalpha.org_GBM.HumanHap550.7.1.0/
       hudsonalpha.org_GBM.HumanHap550.8.1.0/
       hudsonalpha.org_GBM.HumanHap550.9.0.0/

anonymous/
 tumor/
  gbm/
   cgcc/
    hms.harvard.edu/
     hg-cgh-244a/
      cna/
       hms.harvard.edu_GBM.HG-CGH-244A.1.5.0/
       hms.harvard.edu_GBM.HG-CGH-244A.2.4.0/
       hms.harvard.edu_GBM.HG-CGH-244A.3.5.0/
       hms.harvard.edu_GBM.HG-CGH-244A.4.5.0/
       hms.harvard.edu_GBM.HG-CGH-244A.5.0.0/
       hms.harvard.edu_GBM.HG-CGH-244A.6.3.0/
       hms.harvard.edu_GBM.HG-CGH-244A.7.3.0/
       hms.harvard.edu_GBM.HG-CGH-244A.8.3.0/
       hms.harvard.edu_GBM.HG-CGH-244A.9.3.0/
       hms.harvard.edu_GBM.HG-CGH-244A.10.2.0/
       hms.harvard.edu_GBM.HG-CGH-244A.11.0.0/

     hg-cgh-415k_g4124a/
      cna/
       hms.harvard.edu_GBM.HG-CGH-415K_G4124A.Level_2.1.2.0/
       hms.harvard.edu_GBM.HG-CGH-415K_G4124A.2.0.0/
##       hms.harvard.edu_GBM.HG-CGH-415K_G4124A.Level_2.2.1.0/
       hms.harvard.edu_GBM.HG-CGH-415K_G4124A.Level_2.3.1.0/

    jhu-usc.edu/
     humanmethylation27/
      methylation/
       jhu-usc.edu_GBM.HumanMethylation27.1.1.0/
       jhu-usc.edu_GBM.HumanMethylation27.2.0.0/
       jhu-usc.edu_GBM.HumanMethylation27.3.0.0/
       jhu-usc.edu_GBM.HumanMethylation27.4.0.0/
       jhu-usc.edu_GBM.HumanMethylation27.5.0.0/
       jhu-usc.edu_GBM.HumanMethylation27.6.0.0/

     illuminadnamethylation_oma002_cpi/
      methylation/
       jhu-usc.edu_GBM.IlluminaDNAMethylation_OMA002_CPI.1.3.0/
       jhu-usc.edu_GBM.IlluminaDNAMethylation_OMA002_CPI.2.4.0/
       jhu-usc.edu_GBM.IlluminaDNAMethylation_OMA002_CPI.3.1.0/
       jhu-usc.edu_GBM.IlluminaDNAMethylation_OMA002_CPI.4.1.0/
       jhu-usc.edu_GBM.IlluminaDNAMethylation_OMA002_CPI.5.1.0/
       jhu-usc.edu_GBM.IlluminaDNAMethylation_OMA002_CPI.6.1.0/

     illuminadnamethylation_oma003_cpi/
      methylation/
       jhu-usc.edu_GBM.IlluminaDNAMethylation_OMA003_CPI.1.1.0/
       jhu-usc.edu_GBM.IlluminaDNAMethylation_OMA003_CPI.2.1.0/
       jhu-usc.edu_GBM.IlluminaDNAMethylation_OMA003_CPI.3.1.0/
       jhu-usc.edu_GBM.IlluminaDNAMethylation_OMA003_CPI.4.1.0/
       jhu-usc.edu_GBM.IlluminaDNAMethylation_OMA003_CPI.5.1.0/

    mskcc.org/
     hg-cgh-244a/
      cna/
       mskcc.org_GBM.HG-CGH-244A.1.4.0/
       mskcc.org_GBM.HG-CGH-244A.2.3.0/
       mskcc.org_GBM.HG-CGH-244A.3.3.0/
       mskcc.org_GBM.HG-CGH-244A.4.1.0/
       mskcc.org_GBM.HG-CGH-244A.5.2.0/
       mskcc.org_GBM.HG-CGH-244A.6.1.0/
       mskcc.org_GBM.HG-CGH-244A.7.1.0/
       mskcc.org_GBM.HG-CGH-244A.8.1.0/
       mskcc.org_GBM.HG-CGH-244A.10.1.0/
       mskcc.org_GBM.HG-CGH-244A.16.1.0/
       mskcc.org_GBM.HG-CGH-244A.20.1.0/

    unc.edu/
     agilentg4502a_07_1/
      transcriptome/
       unc.edu_GBM.AgilentG4502A_07_1.1.3.0/
       unc.edu_GBM.AgilentG4502A_07_1.2.2.0/
       unc.edu_GBM.AgilentG4502A_07_1.3.3.0/
       unc.edu_GBM.AgilentG4502A_07_1.4.3.0/
  
     agilentg4502a_07_2/
      transcriptome/
       unc.edu_GBM.AgilentG4502A_07_2.5.3.0/
       unc.edu_GBM.AgilentG4502A_07_2.6.2.0/
       unc.edu_GBM.AgilentG4502A_07_2.7.2.0/
       unc.edu_GBM.AgilentG4502A_07_2.8.1.0/
       unc.edu_GBM.AgilentG4502A_07_2.10.0.0/
       unc.edu_GBM.AgilentG4502A_07_2.16.0.0/

     h-mirna_8x15k/
      mirna/
       unc.edu_GBM.H-miRNA_8x15K.1.2.0/
       unc.edu_GBM.H-miRNA_8x15K.2.2.0/
       unc.edu_GBM.H-miRNA_8x15K.3.2.0/
       unc.edu_GBM.H-miRNA_8x15K.4.1.0/
       unc.edu_GBM.H-miRNA_8x15K.5.1.0/
       unc.edu_GBM.H-miRNA_8x15K.6.1.0/
       unc.edu_GBM.H-miRNA_8x15K.7.1.0/
       unc.edu_GBM.H-miRNA_8x15K.8.0.0/
       unc.edu_GBM.H-miRNA_8x15K.10.1.0/
  
     h-mirna_8x15kv2/
      mirna/
       unc.edu_GBM.H-miRNA_8x15Kv2.1.0.0/


############################################################################
# HISTORY:
# 2010-04-05
# o Added jhu-usc.edu (DNA methylation) and unc.edu (gene and miRNA expression).
# 2010-02-17
# o Updated.
# 2009-10-30
# o Still up to date.
# 2009-10-22
# o Updated anonymous/ and tcga4yeo/.
# 2009-10-15
# o Created.
############################################################################
