############################################################################
# TCGA DCC Structure
############################################################################
tcga4yeo/
 tumor/
  ov/
   cgcc/
    broad.mit.edu/
     genome_wide_snp_6/
      snp/
       broad.mit.edu_OV.Genome_Wide_SNP_6.9.7.0/
       broad.mit.edu_OV.Genome_Wide_SNP_6.11.7.0/
       broad.mit.edu_OV.Genome_Wide_SNP_6.12.6.0/
       broad.mit.edu_OV.Genome_Wide_SNP_6.13.6.0/
       broad.mit.edu_OV.Genome_Wide_SNP_6.14.7.0/
       broad.mit.edu_OV.Genome_Wide_SNP_6.15.7.0/
       broad.mit.edu_OV.Genome_Wide_SNP_6.17.7.0/
       broad.mit.edu_OV.Genome_Wide_SNP_6.18.7.0/
       broad.mit.edu_OV.Genome_Wide_SNP_6.19.7.0/
       broad.mit.edu_OV.Genome_Wide_SNP_6.mage-tab.21.1001.0/
       broad.mit.edu_OV.Genome_Wide_SNP_6.aux.21.1001.0/
       broad.mit.edu_OV.Genome_Wide_SNP_6.Level_1.21.1001.0/
       broad.mit.edu_OV.Genome_Wide_SNP_6.mage-tab.22.1001.0/
       broad.mit.edu_OV.Genome_Wide_SNP_6.aux.22.1001.0/
       broad.mit.edu_OV.Genome_Wide_SNP_6.Level_1.22.1001.0/
 
    hudsonalpha.org/
     human1mduo/
      snp/
       hudsonalpha.org_OV.Human1MDuo.1.1.0/
       hudsonalpha.org_OV.Human1MDuo.2.1.0/
       hudsonalpha.org_OV.Human1MDuo.3.0.0/
       hudsonalpha.org_OV.Human1MDuo.4.0.0/
       hudsonalpha.org_OV.Human1MDuo.5.0.0/
       hudsonalpha.org_OV.Human1MDuo.6.0.0/
       hudsonalpha.org_OV.Human1MDuo.7.0.0/
       hudsonalpha.org_OV.Human1MDuo.8.0.0/

anonymous/
 tumor/
  ov/
   cgcc/
    hms.harvard.edu/
     hg-cgh-244a/
      cna/
       hms.harvard.edu_OV.HG-CGH-244A.Level_2.1.1.0/
       hms.harvard.edu_OV.HG-CGH-244A.Level_2.2.3.0/
       hms.harvard.edu_OV.HG-CGH-244A.Level_2.3.1.0/
       hms.harvard.edu_OV.HG-CGH-244A.Level_2.4.3.0/
       hms.harvard.edu_OV.HG-CGH-244A.Level_2.5.3.0/
       hms.harvard.edu_OV.HG-CGH-244A.Level_2.6.1.0/

     hg-cgh-415k_g4124a/
      cna/
       hms.harvard.edu_OV.HG-CGH-415K_G4124A.Level_2.1.4.0/
       hms.harvard.edu_OV.HG-CGH-415K_G4124A.Level_2.2.2.0/
       hms.harvard.edu_OV.HG-CGH-415K_G4124A.Level_2.3.1.0/
       hms.harvard.edu_OV.HG-CGH-415K_G4124A.Level_2.4.1.0/
       hms.harvard.edu_OV.HG-CGH-415K_G4124A.Level_2.5.0.0/

    jhu-usc.edu/
     humanmethylation27/
      methylation/
       jhu-usc.edu_OV.HumanMethylation27.1.2.0/
       jhu-usc.edu_OV.HumanMethylation27.2.2.0/
       jhu-usc.edu_OV.HumanMethylation27.3.2.0/
       jhu-usc.edu_OV.HumanMethylation27.4.1.0/
       jhu-usc.edu_OV.HumanMethylation27.5.0.0/
       jhu-usc.edu_OV.HumanMethylation27.6.0.0/
       jhu-usc.edu_OV.HumanMethylation27.7.0.0/
       jhu-usc.edu_OV.HumanMethylation27.8.0.0/
       jhu-usc.edu_OV.HumanMethylation27.9.0.0/
       jhu-usc.edu_OV.HumanMethylation27.10.0.0/
       jhu-usc.edu_OV.HumanMethylation27.11.0.0/

    mskcc.org/
     hg-cgh-244a/
      cna/
       mskcc.org_OV.HG-CGH-244A.9.3.0/

     cgh-1x1m_g4447a/
      cna/
       mskcc.org_OV.CGH-1x1M_G4447A.9.1.0/
       mskcc.org_OV.CGH-1x1M_G4447A.11.1.0/
       mskcc.org_OV.CGH-1x1M_G4447A.12.1.0/
       mskcc.org_OV.CGH-1x1M_G4447A.13.1.0/
       mskcc.org_OV.CGH-1x1M_G4447A.14.1.0/
       mskcc.org_OV.CGH-1x1M_G4447A.15.1.0/
       mskcc.org_OV.CGH-1x1M_G4447A.17.1.0/
       mskcc.org_OV.CGH-1x1M_G4447A.18.1.0/
       mskcc.org_OV.CGH-1x1M_G4447A.19.1.0/
       mskcc.org_OV.CGH-1x1M_G4447A.21.1.0/
       mskcc.org_OV.CGH-1x1M_G4447A.22.1.0/
       mskcc.org_OV.CGH-1x1M_G4447A.24.1.0/

    unc.edu/
     agilentg4502a_07_2/
      transcriptome/
       unc.edu_OV.AgilentG4502A_07_2.1.2.0/

     agilentg4502a_07_3/
      transcriptome/
       unc.edu_OV.AgilentG4502A_07_3.2.3.0/
       unc.edu_OV.AgilentG4502A_07_3.3.2.0/
       unc.edu_OV.AgilentG4502A_07_3.4.2.0/
       unc.edu_OV.AgilentG4502A_07_3.5.1.0/
       unc.edu_OV.AgilentG4502A_07_3.6.1.0/
       unc.edu_OV.AgilentG4502A_07_3.7.0.0/
       unc.edu_OV.AgilentG4502A_07_3.8.0.0/
       unc.edu_OV.AgilentG4502A_07_3.9.0.0/

     h-mirna_8x15kv2/
      mirna/
       unc.edu_OV.H-miRNA_8x15Kv2.1.1.0/
       unc.edu_OV.H-miRNA_8x15Kv2.2.3.0/
       unc.edu_OV.H-miRNA_8x15Kv2.3.0.0/
       unc.edu_OV.H-miRNA_8x15Kv2.4.1.0/
       unc.edu_OV.H-miRNA_8x15Kv2.5.2.0/
       unc.edu_OV.H-miRNA_8x15Kv2.6.1.0/
       unc.edu_OV.H-miRNA_8x15Kv2.7.1.0/
       unc.edu_OV.H-miRNA_8x15Kv2.8.0.0/
       unc.edu_OV.H-miRNA_8x15Kv2.9.0.0/

  
############################################################################
# HISTORY:
# 2010-04-05
# o Added jhu-usc.edu (DNA methylation) and unc.edu (gene and miRNA expression).
# 2010-03-02
# o Up to date.
# 2010-02-17
# o Updated.
# 2010-01-17
# o Updated with new DCC v3 archives from hms.harvard.edu.
# 2010-01-02
# o Added mskcc.org_OV.CGH-1x1M_G4447A.22.1.0 (2009-12-31).
# o Added mskcc.org_OV.CGH-1x1M_G4447A.21.1.0 (2009-12-10).
# o Added hms.harvard.edu_OV.HG-CGH-415K_G4124A.4.0.0 (2009-11-20).
# 2009-11-06
# o Added hudsonalpha.org_OV.Human1MDuo.8.0.0 (2009-11-04).
# 2009-10-30
# o Still up to date.
# 2009-10-22
# o Updated anonymous/ and tcga4yeo/.
# 2009-08-13
# o Updated with the latest available TCGA archives.
# 2009-06-01
# o Created from tcgaDownload.Rex.
############################################################################
